Publications

Latest first • Each title opens a Google Scholar search for the work.

• Detection and Tracking of SARS-CoV-2 Lineages through National Wastewater Surveillance System Pathogen Genomics
  Feistel, DJ; Welsh, R; Mercante, J; Mark-Carew, M; Caravas, J; Boddapati, A; Chavan, S; et al.
  Emerging Infectious Diseases 31 (Suppl 1), S57, 2025

• Laser Capture Microdissection Transcriptome Reveals Spatiotemporal Tissue Gene Expression Patterns of Medicago truncatula Roots Responding to Rhizobia
  Schnabel, E; Thomas, J; El-Hawaz, R; Gao, Y; Poehlman, WL; Chavan, S; et al.
  Molecular Plant-Microbe Interactions 36 (12), 805-820, 2023
• Fixation and Laser Capture Microdissection of Plant Tissue for RNA Extraction and RNASeq Library Preparation
  Chavan, S; Schnabel, E; Saski, C; Frugoli, J
  Current Protocols 3 (7), e844, 2023
• A Medicago truncatula Autoregulation of Nodulation Mutant Transcriptome Analysis Reveals Disruption of the SUNN Pathway Causes Constitutive Expression Changes in Some Genes …
  Schnabel, EL; Chavan, SA; Gao, Y; Poehlman, WL; Feltus, FA; Frugoli, JA
  Current Issues in Molecular Biology 45 (6), 4612-4631, 2023
• A laser capture microdissection transcriptome of M. truncatula roots responding to rhizobia reveals spatiotemporal tissue expression patterns of genes involved in …
  Schnabel, E; Thomas, J; El-Hawaz, R; Gao, Y; Poehlman, W; Chavan, S; et al.
  bioRxiv, 2023
• Transcriptome analysis of Medicago truncatula Autoregulation of Nodulation mutants reveals that disruption of the SUNN pathway causes constitutive expression changes in a small …
  Schnabel, EL; Chavan, SA; Gao, Y; Poehlman, WL; Feltus, FA; Frugoli, JA
  bioRxiv, 2023

• Time Series Transcriptome Analysis in Medicago truncatula Shoot and Root Tissue During Early Nodulation
  Gao, Y; Selee, B; Schnabel, EL; Poehlman, WL; Chavan, SA; Frugoli, JA; …
  Frontiers in Plant Science 13, 861639, 2022

• Identifying temporally regulated root nodulation biomarkers using time series gene co-expression network analysis
  Poehlman, WL; Schnabel, EL; Chavan, SA; Frugoli, JA; Feltus, FA
  Frontiers in Plant Science 10, 1409, 2019

• CHAPTER THREE IDENTIFYING TEMPORALLY REGULATED ROOT NODULATION BIOMARKERS IN MEDICAGO TRUNCATULA USING TIME SERIES GENE COEXPRESSION ANALYSIS
  Poehlman, WL; Schnabel, E; Chavan, S; Frugoli, J; Alex, F
  TigerPrints (Clemson University), 2018
• Fixation and laser capture microdissection of plant tissue for RNA extraction and RNASeq library preparation
  Chavan, S; Schnabel, E; Saski, C; Frugoli, J
  Current Protocols in Plant Biology 3 (1), 14–32, 2018

• Population Structure of Pseudocercospora fijiensis in Costa Rica Reveals Shared Haplotype Diversity with Southeast Asian Populations
  Saville, A; Charles, M; Chavan, S; Munoz, M; Gómez-Alpizar, L; Ristaino, JB
  Phytopathology 107 (12), 1541–1548, 2017
• Population Structure of Pseudocercospora fijiensis in Costa Rica Reveals Shared Haplotype Diversity with Southeast Asian Populations
  Amanda, Saville; Melodi, Charles; Suchitra, Chavan; Miguel, Muñoz; Luis, Gómez-Alpizar; Beagle, Ristaino Jean
  Unpublished, 2017

• Characterization of the recombination activities of the Entamoeba histolytica Rad51 recombinase
  Kelso, AA; Goodson, SD; Chavan, S; Say, AF; Turchick, A; Sharma, D; …
  Molecular and Biochemical Parasitology 210 (1–2), 71–84, 2016
• Molecular characterization and genetic diversity of Mycosphaerella fijiensis in Costa Rica using sequence based nuclear markers
  Ristaino, J; Saville, A; Charles, M; Wyatt, M; Chavan, S
  Phytopathology (Conference Abstract), 2016

• Molecular characterization and genetic diversity of Mycospharella fijiensis, in Costa Rica using sequence based nuclear markers
  Chavan, S; Wyatt, M; Alpizar, LG; Munoz, ME; Ristaino, JB
  Phytopathology (Conference Abstract), 2015
• Diversity and evolution of Rp1 rust resistance genes in four maize lines
  Chavan, S; Gray, J; Smith, SM
  Theoretical and Applied Genetics 128 (5), 985–998, 2015

• A rapid and efficient method for assessing pathogenicity of Ustilago maydis on maize and teosinte lines
  Chavan, S; Smith, SM
  Journal of Visualized Experiments (JoVE), 50712, 2014
• Expression profiling and analysis of resistance to Ustilago maydis in maize and teosinte
  Chavan, Suchitra Arun
  PhD Dissertation, University of Georgia, 2014

• Expression profiling and evolution of pathogenesis related genes in maize and teosinte in response to Ustilago maydis
  Chavan, S; Smith, SM
  Phytopathology (Conference Abstract), 2013